I then package it into a .pkg package (using PackageMaker). This
will remove Finder Info (and .DS_Store and CVS or SVN related
metadata).
Is the application still correctly signed after that?
When you sign a Cocoa application, the main executable will get signed
(in Contents/MacOS) and most things in the Resources folder will get
signed. If you have a look at the CodeResources file that is generated
you'll get an idea of what's going on. If you remove or add files to
the Resources folder that will affect the code signature and that
includes .DS_Store, CVS or SVN folders.
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