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Re: building primer3_1.0.0 on Mac OS X



Thanks, James.

I had the binary that Bill produced but wanted to upgrade to 1.0. Did not see his notes.

Seems like it was enough just to change LIBOPTS. I set that to empty on Ebrahim Mayat's suggestion and then Primer3 built and tested fine.

Anders.

On Sep 28, 2004, at 5:55 PM, James Nolan wrote:

I have been using primer3_0_9, which I found precompiled somewhere by Bill Van Etten. I looked at his README for macosx and compiled primer3_1_0 using his instructions and it seems to be working. When I tried it without his modifications, I got the same error you did.

Below is his entire readme. Changing the LDLIBS and LIBOPTS line in the Makefile seemed to do the trick.

Good luck and thanks to Bill for porting software for us.

Jim
----------
These binaries were compiled from the source distribution found at
http://www.genome.wi.mit.edu/ftp/distribution/software/ primer3_0_9_test.tar.gz
using the Mac OS X Developer Tools with the following steps.


launch the terminal application
execute the following commands

gnutar zxvf primer3_0_9_test.tar.gz
cd primer3_0_9_test/src

>modified a two lines of the makefile in order to compile primer3 on Mac OS X.
>from:
>LDLIBS = -lm
>LIBOPTS ='-static'
>to:
>LDLIBS =
>LIBOPTS =


make all
cd ../test
perl primer_test.pl

copied primer3_0_9_test directory to a 32 MB (HFS+) mounted image
converted the image to read only compressed format
compressed image file with drop-stuff

Bill
--
William Van Etten, PhD
Blackstone Technology Group
80 Summer Street
Boston, MA 02110
617-542-4770 x4003
email@hidden

-----------

On Tuesday, September 28, 2004, at 02:13 PM, email@hidden wrote:


Has anyone installed primer3_1.0.0 on Mac OS X? When I execute the make
file I get the error


	can't locate file for: -lcrt0.o

No doubt there would be more problems if i fixed that.

I'm not a unix whiz and would appreciate any help you might offer in
getting this up and running.

Thanks,

Anders.

---------------------------------------------------------
Jim Nolan			email:email@hidden
Department of Biochemistry SL43
Tulane University Health Sciences Center
1430 Tulane Ave.		Phone: (504)-988-2453
New Orleans, LA 70112-2699	FAX:   (504)-988-2739
http://www.tulane.edu/~biochem/faculty/nolan.htm
http://phage.bioc.tulane.edu
The requirements said: Windows 2000 or better.
So I got a Macintosh.

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References: 
 >building primer3_1.0.0 on Mac OS X (From: James Nolan <email@hidden>)



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