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Brian help!!!!!! :-) On Feb 5, 2006, at 9:00 AM, email@hidden wrote:
Under Xgrid with Open MPI, I'm trying to run applications that require more than just reading standard input/output but also the creation and writing of other intermediate files. For an application that like HP Linpack that just reads and writes one file, things work fine. My guess is that this is where things are getting hung up. Below, my application was trying to write out a file called "testrun.nex.run1.p" and failed. The MrBayes application writes out two files for each mpi process. Initial log likelihoods for run 1: Chain 1 -- -429.987779 Chain 2 -- -386.761468 Could not open file "testrun.nex.run1.p" Memory allocation error on at least one processor Error in command "Mcmc" There was an error on at least one processor Error in command "Execute" Will exit with signal 1 (error) because quitonerror is set to yes Am I just misunderstanding how to set up Open MPI to work with Xgrid? Warner Yuen Research Computing Consultant Apple Computer email: email@hidden Tel: 408.718.2859 Fax: 408.715.0133 |
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