If I manually shuffle the contents of classpath.txt, I can make the error go away, but I don't know any way to change the order of the frameworks in that file at build time. I've had to do this before. Add a shell script build phase as the last phase in the application target (not application server). Use perl or something similar to munge the classpath. For example, I have some code that fails unless /System/Library/Java/ is at the top of the classpath:
If I manually shuffle the contents of classpath.txt, I can make the error go away, but I don't know any way to change the order of the frameworks in that file at build time.